Variant report

Variant	rs62501177
Chromosome Location	chr8:2202405-2202406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1020983	1.00[ASN][1000 genomes]
rs1122332	1.00[ASN][1000 genomes]
rs12549637	1.00[ASN][1000 genomes]
rs1614403	1.00[ASN][1000 genomes]
rs1869752	1.00[ASN][1000 genomes]
rs2127174	1.00[ASN][1000 genomes]
rs2445955	1.00[ASN][1000 genomes]
rs2618842	1.00[ASN][1000 genomes]
rs316474	1.00[ASN][1000 genomes]
rs57066430	1.00[ASN][1000 genomes]
rs61602506	1.00[ASN][1000 genomes]
rs62501179	1.00[ASN][1000 genomes]
rs62501212	1.00[ASN][1000 genomes]
rs62501259	1.00[ASN][1000 genomes]
rs62502695	1.00[ASN][1000 genomes]
rs62502698	1.00[ASN][1000 genomes]
rs62502699	1.00[ASN][1000 genomes]
rs6982332	1.00[ASN][1000 genomes]
rs7011841	1.00[ASN][1000 genomes]
rs71519826	1.00[ASN][1000 genomes]
rs71519831	1.00[ASN][1000 genomes]
rs71519832	1.00[ASN][1000 genomes]
rs71519833	1.00[ASN][1000 genomes]
rs71519836	1.00[ASN][1000 genomes]
rs717920	1.00[ASN][1000 genomes]
rs7820143	1.00[ASN][1000 genomes]
rs9773479	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2184800-2212200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:2200400-2203200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:2201200-2204600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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