Variant report

Variant	rs62504410
Chromosome Location	chr8:38822313-38822314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr8:38822210-38822558	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:38707845..38711256-chr8:38821077..38824253,4	MCF-7	breast:
2	chr8:38794301..38797045-chr8:38822308..38824981,2	MCF-7	breast:
3	chr8:38822262..38824083-chr8:38854161..38856355,2	MCF-7	breast:

Variant related genes	Relation type
PLEKHA2	TF binding region
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11986341	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11987820	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62504408	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62504409	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:38802800-38831000	Weak transcription	K562	blood
5	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
7	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
8	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain
10	chr8:38815600-38823600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:38815800-38827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:38816000-38825600	Weak transcription	HSMMtube	muscle
13	chr8:38816200-38829600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr8:38816200-38830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:38816400-38823600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:38816400-38823600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:38816600-38823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:38816600-38825200	Genic enhancers	Primary B cells from cord blood	blood
19	chr8:38816800-38831400	Weak transcription	Gastric	stomach
20	chr8:38817000-38826800	Weak transcription	Esophagus	oesophagus
21	chr8:38817400-38827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:38817600-38823800	Weak transcription	Colonic Mucosa	Colon
23	chr8:38817600-38826800	Weak transcription	Brain Anterior Caudate	brain
24	chr8:38817600-38826800	Weak transcription	Small Intestine	intestine
25	chr8:38817600-38827400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:38817600-38831600	Weak transcription	NHEK	skin
27	chr8:38817800-38823600	Weak transcription	Right Ventricle	heart
28	chr8:38817800-38823600	Weak transcription	A549	lung
29	chr8:38817800-38823800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:38817800-38825400	Weak transcription	Liver	Liver
31	chr8:38817800-38835200	Weak transcription	HepG2	liver
32	chr8:38818000-38823800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:38818000-38825200	Weak transcription	Fetal Intestine Large	intestine
34	chr8:38818200-38824800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr8:38818600-38823600	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:38818600-38823800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:38819400-38826000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:38819400-38831200	Weak transcription	NH-A	brain
39	chr8:38819800-38822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:38819800-38824200	Enhancers	Fetal Thymus	thymus
41	chr8:38819800-38824200	Enhancers	Thymus	Thymus
42	chr8:38819800-38825800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:38819800-38826200	Weak transcription	Aorta	Aorta
44	chr8:38820000-38823600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:38820000-38823800	Weak transcription	Fetal Intestine Small	intestine
46	chr8:38820000-38824200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr8:38820000-38825800	Weak transcription	Fetal Stomach	stomach
48	chr8:38820000-38826000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:38820000-38826200	Weak transcription	HMEC	breast
50	chr8:38820200-38822600	Weak transcription	Dnd41	blood

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