Variant report

Variant	rs625080
Chromosome Location	chr11:94005296-94005297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10444216	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1046805	0.95[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs1046812	0.95[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs1070	0.95[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes]
rs10765655	0.85[AMR][1000 genomes]
rs11020675	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1789650	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1789655	0.85[AMR][1000 genomes]
rs1792624	0.85[AMR][1000 genomes]
rs1792634	0.87[MEX][hapmap]
rs1857681	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1893808	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1893809	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3020014	0.82[AMR][1000 genomes]
rs3020015	0.87[AMR][1000 genomes]
rs659288	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs625080	PANX1	cis	parietal	SCAN
rs625080	C11orf54	cis	Whole Blood	GTEx
rs625080	MTNR1B	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94005000-94005400	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links