Variant report

Variant	rs62509952
Chromosome Location	chr8:61090287-61090288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10504307	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356827	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739151	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17739496	0.95[ASN][1000 genomes]
rs17811959	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812084	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536556	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608109	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62509942	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62509950	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62509951	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62509953	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62509954	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62509955	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62509956	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1814106	chr8:61089580-61105199	Strong transcription Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1810985	chr8:61089580-61117903	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61086400-61092400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:61089800-61107800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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