Variant report

Variant	rs62510265
Chromosome Location	chr8:78995224-78995225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34559574	0.85[AMR][1000 genomes]
rs34850235	0.85[AMR][1000 genomes]
rs35430674	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35502711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60610429	0.85[AMR][1000 genomes]
rs62508225	0.97[AMR][1000 genomes]
rs62510262	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752267	chr8:78661586-78995994	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034645	chr8:78782998-78996230	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78992200-78995400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:78992600-78996000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:78993800-78996200	Enhancers	Fetal Lung	lung
4	chr8:78994000-78996200	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:78994600-78995400	Enhancers	Adipose Nuclei	Adipose
6	chr8:78994600-78995400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:78994800-78995600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:78994800-78996400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:78995000-78995400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:78995000-78995600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:78995000-78996600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:78995000-78996800	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:78995200-78995600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:78995200-78996000	Active TSS	Aorta	Aorta
15	chr8:78995200-78996200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr8:78995200-78996400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:78995200-78996400	Flanking Active TSS	Osteobl	bone
18	chr8:78995200-78996800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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