Variant report

Variant	rs62510474
Chromosome Location	chr8:118059626-118059627
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12676208	0.96[EUR][1000 genomes]
rs12677692	0.91[EUR][1000 genomes]
rs12678848	0.89[EUR][1000 genomes]
rs12681789	0.91[EUR][1000 genomes]
rs62510475	1.00[EUR][1000 genomes]
rs62510476	1.00[EUR][1000 genomes]
rs62510477	1.00[EUR][1000 genomes]
rs62510503	1.00[EUR][1000 genomes]
rs62510504	1.00[EUR][1000 genomes]
rs62510513	0.96[EUR][1000 genomes]
rs62510515	0.91[EUR][1000 genomes]
rs62510516	0.91[EUR][1000 genomes]
rs62510518	0.82[EUR][1000 genomes]
rs62510521	0.89[EUR][1000 genomes]
rs62510522	0.89[EUR][1000 genomes]
rs62510551	0.89[EUR][1000 genomes]
rs62510552	0.89[EUR][1000 genomes]
rs62510553	0.89[EUR][1000 genomes]
rs6981381	0.89[EUR][1000 genomes]
rs6997269	0.89[EUR][1000 genomes]
rs72687118	0.89[EUR][1000 genomes]
rs72687119	0.89[EUR][1000 genomes]
rs72687120	0.89[EUR][1000 genomes]
rs7833712	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058000-118060000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:118058600-118061600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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