Variant report

Variant	rs62519109
Chromosome Location	chr8:102540123-102540124
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102538367..102540633-chr8:102553221..102554974,2	MCF-7	breast:
2	chr20:45990501..45991446-chr8:102539898..102540642,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62517383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102527000-102551200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:102527000-102551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:102527200-102555400	Weak transcription	Fetal Intestine Small	intestine
4	chr8:102527200-102556800	Weak transcription	Fetal Intestine Large	intestine
5	chr8:102527800-102540600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:102527800-102541600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:102528000-102542000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:102528000-102542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:102528400-102550600	Weak transcription	Esophagus	oesophagus
10	chr8:102533800-102541600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:102533800-102550200	Weak transcription	HMEC	breast
12	chr8:102533800-102551400	Weak transcription	Pancreas	Pancrea
13	chr8:102536000-102550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:102536800-102550200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:102538000-102540400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:102538200-102550400	Weak transcription	Placenta	Placenta
17	chr8:102539000-102542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:102539200-102540600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:102539200-102542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:102539200-102550200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:102539400-102541600	Weak transcription	NHEK	skin
22	chr8:102539800-102550200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:102540000-102540200	Enhancers	A549	lung

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