Variant report

Variant	rs62520810
Chromosome Location	chr8:125059836-125059837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72714685	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6375	chr8:125056543-125087258	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125052600-125083600	Weak transcription	Gastric	stomach
2	chr8:125053000-125060400	Weak transcription	Left Ventricle	heart
3	chr8:125053800-125062400	Weak transcription	Stomach Mucosa	stomach
4	chr8:125054200-125061000	Weak transcription	Fetal Stomach	stomach
5	chr8:125054600-125066800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:125056400-125060200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:125057800-125062600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:125059000-125065600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:125059400-125060200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:125059400-125060200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:125059400-125060600	Enhancers	Fetal Heart	heart
12	chr8:125059800-125060400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:125059800-125060600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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