Variant report

Variant	rs62525464
Chromosome Location	chr8:104233228-104233229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104232189..104235012-chr8:104237325..104239937,2	MCF-7	breast:
2	chr8:104224929..104229381-chr8:104230946..104234610,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164929	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12156164	0.94[EUR][1000 genomes]
rs1494279	0.94[EUR][1000 genomes]
rs16870235	0.83[EUR][1000 genomes]
rs16870276	0.94[EUR][1000 genomes]
rs59299635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525466	0.98[EUR][1000 genomes]
rs62525469	0.94[EUR][1000 genomes]
rs62525470	0.94[EUR][1000 genomes]
rs62527646	0.81[EUR][1000 genomes]
rs62527649	0.85[EUR][1000 genomes]
rs62527652	0.85[EUR][1000 genomes]
rs62528473	0.94[EUR][1000 genomes]
rs62528474	0.94[EUR][1000 genomes]
rs62528478	0.94[EUR][1000 genomes]
rs72673322	0.85[EUR][1000 genomes]
rs7815503	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv14660	chr8:104182119-104245529	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	esv3337386	chr8:104233086-104233257	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104222400-104240800	Weak transcription	Gastric	stomach
2	chr8:104222400-104241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:104222800-104240800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:104222800-104241000	Weak transcription	NHDF-Ad	bronchial
5	chr8:104225400-104240400	Weak transcription	Brain Angular Gyrus	brain
6	chr8:104226400-104242800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:104226600-104234800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:104227400-104237800	Weak transcription	Aorta	Aorta
9	chr8:104227600-104242200	Weak transcription	Fetal Brain Female	brain
10	chr8:104227600-104245400	Weak transcription	Fetal Brain Male	brain
11	chr8:104228000-104241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:104228200-104233800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:104230000-104237600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:104230000-104240400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:104230200-104240600	Weak transcription	Brain Anterior Caudate	brain
16	chr8:104230400-104235000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr8:104230600-104233400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:104230600-104240000	Weak transcription	Brain Substantia Nigra	brain
19	chr8:104231000-104240400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:104231200-104233400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:104231200-104234400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:104231200-104243000	Weak transcription	Esophagus	oesophagus
23	chr8:104232000-104236200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:104232000-104241600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:104232400-104233800	Enhancers	Hela-S3	cervix
26	chr8:104232600-104238400	Weak transcription	Spleen	Spleen
27	chr8:104232600-104240000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:104232600-104241400	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:104232800-104233400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:104232800-104233600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:104233000-104233600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:104233000-104233800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr8:104233000-104233800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr8:104233000-104234000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:104233200-104233400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr8:104233200-104233400	Enhancers	Lung	lung
37	chr8:104233200-104233400	Enhancers	NHLF	lung
38	chr8:104233200-104233600	Enhancers	HUVEC	blood vessel
39	chr8:104233200-104233800	Enhancers	Brain Cingulate Gyrus	brain
40	chr8:104233200-104233800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr8:104233200-104234000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr8:104233200-104234600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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