Variant report

Variant	rs62525491
Chromosome Location	chr8:104292343-104292344
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:104288724..104293754-chr8:104308710..104311344,7	MCF-7	breast:
2	chr8:104290643..104293920-chr8:104294034..104295976,4	MCF-7	breast:
3	chr8:104289531..104293502-chr8:104385386..104388063,3	MCF-7	breast:
4	chr8:104291177..104292455-chr8:104385073..104386105,8	MCF-7	breast:
5	chr8:104291913..104293426-chr8:104426579..104428260,2	MCF-7	breast:
6	chr8:104290229..104295041-chr8:104295678..104299330,4	MCF-7	breast:
7	chr8:104291017..104292347-chr8:104524005..104524972,3	MCF-7	breast:
8	chr8:104292150..104293871-chr8:104425235..104426887,2	MCF-7	breast:
9	chr8:104290160..104293505-chr8:104310027..104313255,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164930	Chromatin interaction
ENSG00000164933	Chromatin interaction
ENSG00000164934	Chromatin interaction
ENSG00000247081	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17204975	1.00[ASN][1000 genomes]
rs17793792	1.00[ASN][1000 genomes]
rs56666894	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61753730	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62525460	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62525462	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525467	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525473	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525493	0.82[EUR][1000 genomes]
rs62525496	0.82[EUR][1000 genomes]
rs62525499	0.82[EUR][1000 genomes]
rs62525513	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1017326	chr8:104236193-104313235	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104284800-104295400	Weak transcription	Aorta	Aorta
2	chr8:104288400-104295400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:104288600-104293200	Weak transcription	NH-A	brain
4	chr8:104288800-104293400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:104289200-104302000	Weak transcription	Fetal Heart	heart
6	chr8:104289600-104292600	Enhancers	Osteobl	bone
7	chr8:104290200-104293600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:104290200-104293800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:104290600-104293400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:104291200-104293600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:104291200-104294000	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:104291200-104294200	Enhancers	HUVEC	blood vessel
13	chr8:104291400-104294000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:104291400-104294800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:104291600-104292400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:104291600-104292400	Enhancers	Adipose Nuclei	Adipose
17	chr8:104291800-104293400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:104291800-104293400	Weak transcription	NHLF	lung
19	chr8:104291800-104293800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:104292000-104293200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:104292000-104293200	Weak transcription	NHDF-Ad	bronchial
22	chr8:104292000-104293400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:104292000-104293400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:104292000-104293800	Weak transcription	Fetal Stomach	stomach
25	chr8:104292000-104293800	Weak transcription	Left Ventricle	heart
26	chr8:104292200-104293200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:104292200-104293200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:104292200-104293200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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