Variant report

Variant	rs62526521
Chromosome Location	chr8:122737922-122737923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122691123..122693754-chr8:122736382..122738326,2	MCF-7	breast:
2	chr8:122651713..122654579-chr8:122736757..122738979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248690	Chromatin interaction
ENSG00000170961	Chromatin interaction
ENSG00000248478	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17243236	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17243536	0.87[ASN][1000 genomes]
rs7815051	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030713	chr8:122714959-122780805	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122735600-122740000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:122735600-122740200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:122735600-122740400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:122735800-122740000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:122736000-122738000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:122736000-122739000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:122736200-122738200	Enhancers	HSMMtube	muscle
8	chr8:122736200-122739200	Enhancers	HMEC	breast
9	chr8:122736200-122739800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:122736200-122740000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr8:122736200-122740600	Enhancers	Dnd41	blood
12	chr8:122736400-122738000	Enhancers	Fetal Stomach	stomach
13	chr8:122736400-122738200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr8:122736400-122739000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:122736400-122739000	Enhancers	Fetal Muscle Leg	muscle
16	chr8:122736400-122740000	Enhancers	Primary T cells from cord blood	blood
17	chr8:122736400-122740600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr8:122736600-122738200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:122736600-122738400	Enhancers	NHDF-Ad	bronchial
20	chr8:122736600-122740000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr8:122736800-122739200	Enhancers	NHEK	skin
22	chr8:122736800-122740000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:122736800-122740000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr8:122737000-122738000	Weak transcription	Esophagus	oesophagus
25	chr8:122737000-122738000	Weak transcription	Psoas Muscle	Psoas
26	chr8:122737000-122738000	Enhancers	NH-A	brain
27	chr8:122737000-122738200	Enhancers	Osteobl	bone
28	chr8:122737000-122738800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:122737000-122739400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:122737200-122738000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:122737200-122738000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:122737200-122738200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:122737200-122738200	Weak transcription	Fetal Thymus	thymus
34	chr8:122737200-122738200	Enhancers	HSMM	muscle
35	chr8:122737200-122738400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr8:122737200-122738400	Enhancers	Adipose Nuclei	Adipose
37	chr8:122737200-122738600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:122737200-122740600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr8:122737400-122738000	Weak transcription	Right Atrium	heart
40	chr8:122737400-122738800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:122737400-122740000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr8:122737600-122738200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:122737600-122738600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:122737600-122738600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:122737800-122738200	Weak transcription	Thymus	Thymus
46	chr8:122737800-122738600	Enhancers	Hela-S3	cervix
47	chr8:122737800-122739000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:122737800-122740000	Enhancers	A549	lung

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