Variant report

Variant	rs62528695
Chromosome Location	chr8:120977432-120977433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62526619	1.00[AFR][1000 genomes]
rs62526623	1.00[AFR][1000 genomes]
rs72690123	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120964200-120977600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:120968800-120977600	Weak transcription	Spleen	Spleen
3	chr8:120968800-120981800	Weak transcription	Stomach Mucosa	stomach
4	chr8:120968800-120987800	Weak transcription	Placenta	Placenta
5	chr8:120968800-120988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:120970800-120980200	Weak transcription	Psoas Muscle	Psoas
7	chr8:120976000-120986000	Weak transcription	Thymus	Thymus
8	chr8:120976200-120977600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:120976400-120977600	Weak transcription	Brain Anterior Caudate	brain
10	chr8:120976800-120984400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:120977200-120977600	Weak transcription	Fetal Lung	lung
12	chr8:120977200-120978000	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr8:120977200-120979400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr8:120977200-120979600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr8:120977200-120981000	Strong transcription	Fetal Muscle Leg	muscle
16	chr8:120977200-120981000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:120977200-120981400	Strong transcription	Fetal Intestine Large	intestine
18	chr8:120977200-120984200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:120977200-120984800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:120977400-120977600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:120977400-120977800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
22	chr8:120977400-120977800	ZNF genes & repeats	Liver	Liver
23	chr8:120977400-120977800	ZNF genes & repeats	Fetal Stomach	stomach
24	chr8:120977400-120977800	ZNF genes & repeats	Lung	lung
25	chr8:120977400-120978000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:120977400-120978000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr8:120977400-120978000	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr8:120977400-120978000	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr8:120977400-120978000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr8:120977400-120978000	Strong transcription	Brain Germinal Matrix	brain
31	chr8:120977400-120978000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:120977400-120978000	Strong transcription	Esophagus	oesophagus
33	chr8:120977400-120978000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr8:120977400-120978000	ZNF genes & repeats	Gastric	stomach
35	chr8:120977400-120978000	ZNF genes & repeats	Pancreas	Pancrea
36	chr8:120977400-120978000	Strong transcription	Right Ventricle	heart
37	chr8:120977400-120978000	ZNF genes & repeats	Osteobl	bone
38	chr8:120977400-120978200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:120977400-120978200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
40	chr8:120977400-120978200	Strong transcription	Colonic Mucosa	Colon
41	chr8:120977400-120978200	Strong transcription	Colon Smooth Muscle	Colon
42	chr8:120977400-120978400	Strong transcription	Primary T cells from cord blood	blood
43	chr8:120977400-120978600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr8:120977400-120978800	Strong transcription	Fetal Kidney	kidney
45	chr8:120977400-120979200	Strong transcription	Brain Substantia Nigra	brain
46	chr8:120977400-120979200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:120977400-120979200	Strong transcription	Rectal Smooth Muscle	rectum
48	chr8:120977400-120979400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr8:120977400-120979400	Strong transcription	Left Ventricle	heart
50	chr8:120977400-120980400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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