Variant report
Variant | rs62532080 |
---|---|
Chromosome Location | chr8:90688136-90688137 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11995065 | 1.00[ASN][1000 genomes] |
rs12156351 | 0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13250228 | 1.00[ASN][1000 genomes] |
rs13256893 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs13262484 | 1.00[ASN][1000 genomes] |
rs13265005 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13267411 | 1.00[ASN][1000 genomes] |
rs13270337 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13274661 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs13281958 | 1.00[ASN][1000 genomes] |
rs160438 | 0.82[EUR][1000 genomes] |
rs2230801 | 1.00[ASN][1000 genomes] |
rs34038516 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34099903 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs34211510 | 1.00[ASN][1000 genomes] |
rs34541191 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs35168775 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35353289 | 1.00[ASN][1000 genomes] |
rs35469651 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs35598276 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35643733 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35741091 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35976220 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs36032938 | 1.00[ASN][1000 genomes] |
rs36139021 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62532117 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62533561 | 0.92[ASN][1000 genomes] |
rs6991439 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6998924 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7833230 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7841459 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv465735 | chr8:89760311-90729507 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
2 | nsv611714 | chr8:89760311-90729507 | Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv870380 | chr8:90546585-90720182 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv982109 | chr8:90556188-90703631 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1026523 | chr8:90558935-90722580 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
6 | nsv831389 | chr8:90575517-90753120 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
7 | nsv1017263 | chr8:90605445-90722580 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
8 | nsv1031578 | chr8:90670102-90757821 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
9 | esv3340425 | chr8:90686312-90722629 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:90676000-90690600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr8:90676000-90690600 | Weak transcription | Pancreas | Pancrea |
3 | chr8:90682000-90690600 | Weak transcription | Ovary | ovary |
4 | chr8:90684800-90690600 | Weak transcription | Aorta | Aorta |
5 | chr8:90685400-90692800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |