Variant report
| Variant | rs62532199 |
|---|---|
| Chromosome Location | chr8:120104433-120104434 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11777125 | 0.85[ASN][1000 genomes] |
| rs11992453 | 0.91[ASN][1000 genomes] |
| rs13261635 | 0.84[ASN][1000 genomes] |
| rs1385491 | 0.85[ASN][1000 genomes] |
| rs1485291 | 0.92[ASN][1000 genomes] |
| rs1485292 | 0.85[ASN][1000 genomes] |
| rs1485299 | 0.80[ASN][1000 genomes] |
| rs1485300 | 0.80[ASN][1000 genomes] |
| rs1905774 | 0.89[ASN][1000 genomes] |
| rs2450060 | 0.92[ASN][1000 genomes] |
| rs2450063 | 0.89[ASN][1000 genomes] |
| rs2450071 | 0.85[ASN][1000 genomes] |
| rs2450073 | 0.85[ASN][1000 genomes] |
| rs2450074 | 0.85[ASN][1000 genomes] |
| rs2450075 | 0.87[ASN][1000 genomes] |
| rs2450077 | 0.89[ASN][1000 genomes] |
| rs2450079 | 0.89[ASN][1000 genomes] |
| rs2450081 | 0.84[ASN][1000 genomes] |
| rs2465386 | 0.90[ASN][1000 genomes] |
| rs2465388 | 0.92[ASN][1000 genomes] |
| rs2465389 | 0.92[ASN][1000 genomes] |
| rs2465397 | 0.89[ASN][1000 genomes] |
| rs2468167 | 0.82[ASN][1000 genomes] |
| rs4279627 | 0.92[ASN][1000 genomes] |
| rs6469812 | 0.87[ASN][1000 genomes] |
| rs6469813 | 0.92[ASN][1000 genomes] |
| rs6469814 | 0.87[ASN][1000 genomes] |
| rs6469816 | 0.85[ASN][1000 genomes] |
| rs6991747 | 0.92[ASN][1000 genomes] |
| rs7013461 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7386676 | 0.87[ASN][1000 genomes] |
| rs9650076 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | esv2758169 | chr8:119943309-120275750 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | esv2759639 | chr8:119943309-120275750 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120099200-120106000 | Weak transcription | NHLF | lung |
| 2 | chr8:120103800-120117400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
