Variant report

Variant	rs62533210
Chromosome Location	chr9:13721340-13721341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10756489	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12686423	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2025437	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4741325	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8192981	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13716800-13722000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:13717200-13721600	Enhancers	NH-A	brain
3	chr9:13717400-13722200	Enhancers	HSMMtube	muscle
4	chr9:13717600-13728000	Weak transcription	HUVEC	blood vessel
5	chr9:13718200-13727400	Weak transcription	Fetal Brain Male	brain
6	chr9:13718400-13721800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:13719400-13722000	Enhancers	NHDF-Ad	bronchial
8	chr9:13719800-13721600	Enhancers	HSMM	muscle
9	chr9:13720600-13722000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:13720800-13721400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:13720800-13729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:13721000-13721600	Weak transcription	Osteobl	bone
13	chr9:13721200-13721600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:13721200-13721800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:13721200-13721800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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