Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10114433	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11793698	0.81[AMR][1000 genomes]
rs12349815	0.80[EUR][1000 genomes]
rs2262066	0.85[AMR][1000 genomes]
rs2785419	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3897365	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60676041	0.96[EUR][1000 genomes]
rs61352486	1.00[EUR][1000 genomes]
rs62530930	0.81[AMR][1000 genomes]
rs62530932	0.81[AMR][1000 genomes]
rs62530933	0.94[AMR][1000 genomes]
rs62530938	0.81[AMR][1000 genomes]
rs62531965	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62531967	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62532015	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62532037	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62532038	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62533273	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7040250	0.84[EUR][1000 genomes]
rs7040668	0.91[EUR][1000 genomes]
rs7048876	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv877226	chr3:101681481-101803052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101768000-101772600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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