Variant report

Variant	rs62535363
Chromosome Location	chr9:14653675-14653676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14652918..14654762-chr9:14661773..14663664,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17215754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17216147	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17287927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457430	0.86[EUR][1000 genomes]
rs4741418	0.82[EUR][1000 genomes]
rs57552216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58351851	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60001745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201601	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62535361	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62535367	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62535368	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62535388	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62538526	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62539797	0.82[EUR][1000 genomes]
rs7859680	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv521363	chr9:14566406-14691897	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv892605	chr9:14585052-14709151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892606	chr9:14588049-14697022	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv892608	chr9:14589173-14689088	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv892609	chr9:14589173-14694302	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv2752921	chr9:14593749-14694372	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2755661	chr9:14615367-14660700	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv892610	chr9:14622952-14654900	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv892611	chr9:14635546-14676174	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv466260	chr9:14639666-14662459	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv613643	chr9:14639666-14662459	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1033392	chr9:14643651-14657693	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14597000-14655000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:14599800-14654000	Weak transcription	Fetal Heart	heart
3	chr9:14605600-14654800	Weak transcription	HSMM	muscle
4	chr9:14610200-14654800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:14613600-14654600	Weak transcription	Fetal Kidney	kidney
6	chr9:14619400-14654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:14619600-14654800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:14626800-14655000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:14629400-14654600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:14629400-14655000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:14630000-14654400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:14630400-14654800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:14631000-14654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:14631000-14654800	Weak transcription	Brain Anterior Caudate	brain
15	chr9:14631000-14654800	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:14631000-14692400	Weak transcription	HSMMtube	muscle
17	chr9:14631800-14654000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:14632600-14654000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:14633400-14653800	Weak transcription	Fetal Lung	lung
20	chr9:14634200-14654000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:14634400-14654000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:14634400-14686600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:14634600-14654000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:14634600-14654200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:14634600-14654400	Weak transcription	Fetal Intestine Large	intestine
26	chr9:14634600-14654800	Weak transcription	Right Ventricle	heart
27	chr9:14634600-14659000	Weak transcription	Fetal Stomach	stomach
28	chr9:14634600-14692400	Weak transcription	Gastric	stomach
29	chr9:14634600-14692600	Weak transcription	Aorta	Aorta
30	chr9:14635600-14653800	Weak transcription	Brain Germinal Matrix	brain
31	chr9:14635800-14659800	Weak transcription	Ovary	ovary
32	chr9:14638400-14654600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:14646800-14654000	Weak transcription	Pancreas	Pancrea
34	chr9:14648000-14654600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:14648200-14663800	Weak transcription	Placenta	Placenta
36	chr9:14648400-14654400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:14650000-14654000	Weak transcription	HUVEC	blood vessel
38	chr9:14651000-14654400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:14651200-14654000	Weak transcription	Fetal Brain Male	brain
40	chr9:14651400-14659400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:14652000-14654600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:14652000-14687000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr9:14652600-14653800	Strong transcription	Primary B cells from cord blood	blood
44	chr9:14652600-14658400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:14652800-14653800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr9:14652800-14654000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr9:14652800-14654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:14652800-14655400	ZNF genes & repeats	A549	lung
49	chr9:14652800-14655600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:14653000-14654200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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