Variant report
| Variant | rs62539162 |
|---|---|
| Chromosome Location | chr9:43011013-43011014 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:22)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:22 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SP1 | chr9:43010756-43011197 | GM12878 | blood: | n/a | n/a |
| 2 | BCL11A | chr9:43010839-43011125 | GM12878 | blood: | n/a | n/a |
| 3 | TCF12 | chr9:43010775-43011115 | GM12878 | blood: | n/a | n/a |
| 4 | POU2F2 | chr9:43009725-43011169 | GM12891 | blood: | n/a | n/a |
| 5 | PAX5 | chr9:43009943-43011170 | GM12878 | blood: | n/a | n/a |
| 6 | ZBTB33 | chr9:43010715-43011107 | GM12878 | blood: | n/a | n/a |
| 7 | SPI1 | chr9:43010727-43011241 | GM12878 | blood: | n/a | chr9:43011093-43011106 |
| 8 | SPI1 | chr9:43010863-43011202 | GM12878 | blood: | n/a | chr9:43011093-43011106 |
| 9 | EBF1 | chr9:43010723-43011399 | GM12878 | blood: | n/a | chr9:43011232-43011241 chr9:43011231-43011241 chr9:43011230-43011243 |
| 10 | SP1 | chr9:43010775-43011236 | GM12878 | blood: | n/a | n/a |
| 11 | SPI1 | chr9:43010661-43011366 | GM12878 | blood: | n/a | chr9:43011093-43011106 |
| 12 | SPI1 | chr9:43010951-43011230 | K562 | blood: | n/a | chr9:43011093-43011106 |
| 13 | FOSL2 | chr9:43010597-43011129 | HepG2 | liver: | n/a | n/a |
| 14 | PAX5 | chr9:43010723-43011104 | GM12878 | blood: | n/a | n/a |
| 15 | SPI1 | chr9:43010873-43011218 | GM12891 | blood: | n/a | chr9:43011093-43011106 |
| 16 | EBF1 | chr9:43010718-43011359 | GM12878 | blood: | n/a | chr9:43011232-43011241 chr9:43011231-43011241 chr9:43011230-43011243 |
| 17 | SPI1 | chr9:43010895-43011199 | K562 | blood: | n/a | chr9:43011093-43011106 |
| 18 | PAX5 | chr9:43009845-43011243 | GM12878 | blood: | n/a | n/a |
| 19 | IRF4 | chr9:43010629-43011032 | GM12878 | blood: | n/a | n/a |
| 20 | POU2F2 | chr9:43009745-43011228 | GM12878 | blood: | n/a | n/a |
| 21 | TCF3 | chr9:43010831-43011115 | GM12878 | blood: | n/a | n/a |
| 22 | PAX5 | chr9:43010882-43011030 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000269225 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1826083 | chr9:42228512-43187726 | Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer | TF binding regionCpG islandlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | esv1822891 | chr9:42316318-43198208 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 37 gene(s) | inside rSNPs | diseases |
| 3 | esv3430158 | chr9:42993656-43012254 | Inactive region | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv982243 | chr9:42995364-43160734 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 5 | esv3427576 | chr9:42996356-43016654 | Inactive region | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3417498 | chr9:43001756-43016454 | Inactive region | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv973610 | chr9:43007521-43011927 | Inactive region | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
