Variant report

Variant	rs62541919
Chromosome Location	chr9:16863364-16863365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10283446	0.95[ASN][1000 genomes]
rs10756822	0.82[ASN][1000 genomes]
rs10810648	0.92[ASN][1000 genomes]
rs10810650	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810652	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810655	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810657	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962650	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962668	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12345776	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12350739	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1339552	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416742	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890640	0.81[ASN][1000 genomes]
rs2153271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28498684	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36116821	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3927680	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4644350	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7040151	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv1814340	chr9:16851678-16865699	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16829800-16864200	Weak transcription	NH-A	brain
2	chr9:16831200-16863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:16831200-16864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:16833800-16863800	Weak transcription	NHLF	lung
5	chr9:16836200-16864400	Weak transcription	NHDF-Ad	bronchial
6	chr9:16853000-16864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:16853200-16863800	Weak transcription	Osteobl	bone
8	chr9:16853400-16864400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:16854000-16863800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:16855800-16864600	Weak transcription	Psoas Muscle	Psoas
11	chr9:16856600-16863400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16858400-16863400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:16858400-16864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:16858400-16864400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:16859800-16864400	Weak transcription	HSMM	muscle
16	chr9:16860000-16864400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:16860800-16867800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:16861000-16864400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:16862200-16864400	Enhancers	Colon Smooth Muscle	Colon
20	chr9:16862400-16863400	Enhancers	Stomach Smooth Muscle	stomach
21	chr9:16862400-16864600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:16862400-16868000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:16863000-16863800	Enhancers	Ovary	ovary
24	chr9:16863200-16863600	Enhancers	Fetal Stomach	stomach
25	chr9:16863200-16864200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:16863200-16864400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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