Variant report

Variant	rs625423
Chromosome Location	chr1:58701062-58701063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3850538	0.82[ASN][1000 genomes]
rs547742	0.80[AMR][1000 genomes]
rs678330	0.84[EUR][1000 genomes]
rs951421	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58695800-58701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:58697200-58701400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:58698000-58701400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:58699000-58701200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:58699000-58701200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:58699400-58701400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:58699600-58701400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:58700000-58701400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:58700000-58701400	Weak transcription	Psoas Muscle	Psoas
10	chr1:58700000-58701800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:58700400-58705000	Weak transcription	Fetal Brain Male	brain
12	chr1:58701000-58703400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:58701000-58705200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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