Variant report

Variant	rs62542685
Chromosome Location	chr9:26604431-26604432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10967432	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10967433	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11789246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790568	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11794467	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542676	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542682	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542684	0.81[AMR][1000 genomes]
rs62542687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542716	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542719	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913161	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892857	chr9:26593785-26633841	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv6508	chr9:26602437-26647117	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26602600-26604800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:26602800-26604600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:26602800-26604600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:26603000-26604600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:26603000-26604600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:26603000-26604600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:26603000-26604600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:26603000-26604600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:26603200-26604600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr9:26603200-26604600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:26603200-26605400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:26603400-26604600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:26603600-26604600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr9:26603800-26604600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:26604000-26605200	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:26604000-26605400	Weak transcription	Fetal Lung	lung
17	chr9:26604200-26604600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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