Variant report

Variant	rs62548506
Chromosome Location	chr9:18076150-18076151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12348651	0.88[EUR][1000 genomes]
rs12350402	0.90[EUR][1000 genomes]
rs16936287	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62548502	1.00[EUR][1000 genomes]
rs73420818	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18072400-18077800	Weak transcription	Aorta	Aorta
2	chr9:18074000-18076200	Weak transcription	Fetal Heart	heart
3	chr9:18074400-18076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:18074400-18080600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:18074800-18076400	Weak transcription	Colonic Mucosa	Colon
6	chr9:18074800-18076600	Enhancers	Liver	Liver
7	chr9:18075000-18085000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:18075400-18076800	Enhancers	Ovary	ovary
9	chr9:18075600-18077600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:18075800-18076600	Enhancers	Colon Smooth Muscle	Colon
11	chr9:18075800-18076600	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:18076000-18078000	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr9:18076000-18078200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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