Variant report

Variant	rs62572371
Chromosome Location	chr9:95618806-95618807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10992480	0.94[ASN][1000 genomes]
rs10992483	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992485	0.99[ASN][1000 genomes]
rs10992498	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12685640	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62572373	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs716076	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95605000-95624200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95606800-95619600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:95610800-95619800	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr9:95611000-95619800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:95611000-95620000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:95611000-95620000	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr9:95611200-95620600	Strong transcription	Left Ventricle	heart
9	chr9:95611200-95632800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:95611600-95619800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:95611600-95620000	Strong transcription	Osteobl	bone
12	chr9:95612400-95622000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr9:95612400-95622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:95612400-95624200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:95612600-95620200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:95612600-95620400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr9:95612600-95620400	Strong transcription	Fetal Muscle Leg	muscle
18	chr9:95613200-95620400	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:95613400-95619600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:95613400-95619800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:95613400-95620000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr9:95613400-95621600	Weak transcription	HMEC	breast
23	chr9:95614000-95624200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr9:95614200-95620400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:95614400-95620400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:95615000-95619400	Strong transcription	Ovary	ovary
27	chr9:95615000-95619800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr9:95615000-95620000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:95615000-95620600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:95615200-95619800	Strong transcription	HepG2	liver
31	chr9:95615200-95620200	Strong transcription	Primary T cells from cord blood	blood
32	chr9:95615200-95620600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:95615400-95619600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:95615400-95619800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:95615400-95620000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:95615400-95620400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr9:95615600-95619200	Strong transcription	Fetal Brain Female	brain
38	chr9:95615600-95619800	Strong transcription	Lung	lung
39	chr9:95615600-95620400	Strong transcription	Fetal Intestine Large	intestine
40	chr9:95616000-95619400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:95616200-95619400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:95616200-95620400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:95616200-95620800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:95616200-95621600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:95616200-95621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:95616200-95621800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:95616200-95622000	Weak transcription	Esophagus	oesophagus
48	chr9:95616200-95622000	Weak transcription	Stomach Mucosa	stomach
49	chr9:95616200-95622200	Weak transcription	NHLF	lung
50	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell

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