Variant report

Variant	rs62573565
Chromosome Location	chr9:95822147-95822148
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95819533..95824260-chr9:95855982..95859349,6	K562	blood:
2	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
3	chr9:95818455..95825266-chr9:95831322..95836031,9	K562	blood:
4	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:
5	chr9:95791616..95793622-chr9:95821963..95824381,2	MCF-7	breast:
6	chr9:95818697..95822651-chr9:95855885..95860349,6	MCF-7	breast:
7	chr9:95639787..95641673-chr9:95820453..95823030,2	K562	blood:
8	chr9:95819594..95823966-chr9:95894549..95897415,5	MCF-7	breast:
9	chr9:95820491..95823416-chr9:96211285..96213612,2	K562	blood:
10	chr9:95819521..95827100-chr9:95855273..95859349,14	K562	blood:
11	chr9:95821374..95823833-chr9:95837106..95839340,2	K562	blood:
12	chr9:95821315..95824272-chr9:95832580..95834111,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157303	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000127081	Chromatin interaction
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11790147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11790662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11794425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56988496	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59221745	0.82[AFR][1000 genomes]
rs60481048	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7859904	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95820000-95822600	Active TSS	Rectal Smooth Muscle	rectum
2	chr9:95820600-95822800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:95820800-95827600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:95821000-95822400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:95821000-95822800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:95821000-95822800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:95821000-95823000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr9:95821000-95827400	Flanking Active TSS	GM12878-XiMat	blood
9	chr9:95821200-95822200	Active TSS	Brain Anterior Caudate	brain
10	chr9:95821200-95822400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:95821200-95822600	Active TSS	Brain Hippocampus Middle	brain
12	chr9:95821200-95823400	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr9:95821400-95822200	Enhancers	Left Ventricle	heart
14	chr9:95821400-95822200	Weak transcription	Pancreas	Pancrea
15	chr9:95821400-95822400	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:95821400-95822400	Weak transcription	Fetal Heart	heart
17	chr9:95821400-95822600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:95821400-95822600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:95821400-95822600	Weak transcription	Osteobl	bone
20	chr9:95821400-95823000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:95821400-95823200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:95821400-95823200	Weak transcription	HSMM	muscle
23	chr9:95821400-95823600	Bivalent Enhancer	Fetal Stomach	stomach
24	chr9:95821400-95823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:95821400-95824400	Enhancers	Lung	lung
26	chr9:95821600-95822200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:95821600-95822200	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr9:95821600-95822200	Enhancers	Stomach Mucosa	stomach
29	chr9:95821600-95822400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr9:95821600-95822400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr9:95821600-95822600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
32	chr9:95821600-95822600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:95821600-95822600	Weak transcription	Right Ventricle	heart
34	chr9:95821600-95822800	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr9:95821600-95822800	Flanking Active TSS	Fetal Thymus	thymus
36	chr9:95821600-95822800	Weak transcription	NHLF	lung
37	chr9:95821600-95823000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr9:95821600-95823200	Weak transcription	Aorta	Aorta
39	chr9:95821600-95823600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:95821600-95823800	Flanking Active TSS	K562	blood
41	chr9:95821600-95824800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr9:95821600-95827400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr9:95821600-95827600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr9:95821800-95822200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr9:95821800-95822200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:95821800-95822200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
47	chr9:95821800-95822200	Flanking Active TSS	Ovary	ovary
48	chr9:95821800-95822200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr9:95821800-95822200	Enhancers	Small Intestine	intestine
50	chr9:95821800-95822600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain

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