Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:100649531..100652518-chr9:100653450..100655843,2	MCF-7	breast:
2	chr9:100648546..100652838-chr9:100654754..100658082,3	K562	blood:
3	chr9:100641121..100643077-chr9:100648221..100651818,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10984193	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984297	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10984349	0.83[EUR][1000 genomes]
rs10984462	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1127703	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12235434	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12236440	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12237296	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17346310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780416	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3780417	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3780418	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3780419	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4560904	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62574035	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67500034	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67975003	0.83[EUR][1000 genomes]
rs68112593	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7040232	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72753548	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72753572	0.83[EUR][1000 genomes]
rs7855917	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7864655	0.83[EUR][1000 genomes]
rs7870125	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100637600-100658000	Weak transcription	Gastric	stomach
2	chr9:100637800-100652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:100649600-100650400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:100649600-100651000	Enhancers	NHEK	skin
5	chr9:100649600-100651400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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