Variant report

Variant	rs62574436
Chromosome Location	chr9:115824028-115824029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:115823951-115824196	GM12878	blood:	n/a	n/a
2	FOSL2	chr9:115823640-115824339	HepG2	liver:	n/a	n/a
3	SP1	chr9:115823826-115824098	H1-hESC	embryonic stem cell:	n/a	chr9:115824082-115824092 chr9:115824082-115824092
4	SUZ12	chr9:115823543-115824177	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr9:115823819-115824137	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr9:115823849-115824049	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL11A	chr9:115823884-115824048	H1-hESC	embryonic stem cell:	n/a	n/a
8	PAX5	chr9:115824023-115825834	GM12878	blood:	n/a	chr9:115824242-115824251 chr9:115824251-115824269
9	TCF3	chr9:115823584-115824440	GM12878	blood:	n/a	chr9:115823687-115823697 chr9:115823685-115823699
10	YY1	chr9:115823821-115824261	H1-hESC	embryonic stem cell:	n/a	n/a
11	SIX5	chr9:115823988-115824205	K562	blood:	n/a	n/a
12	JUND	chr9:115823926-115824033	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr9:115823780-115824198	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr9:115823677-115824349	H1-hESC	embryonic stem cell:	n/a	n/a
15	ZBTB33	chr9:115824004-115824406	GM12878	blood:	n/a	n/a
16	TCF12	chr9:115823898-115824144	H1-hESC	embryonic stem cell:	n/a	n/a
17	GABPA	chr9:115823265-115824772	Hela-S3	cervix:	n/a	chr9:115824134-115824141
18	CTBP2	chr9:115823828-115824165	H1-hESC	embryonic stem cell:	n/a	n/a
19	TCF12	chr9:115823841-115824157	H1-hESC	embryonic stem cell:	n/a	n/a
20	REST	chr9:115823032-115824339	PANC-1	pancreas:	n/a	n/a
21	TEAD4	chr9:115823768-115824241	H1-hESC	embryonic stem cell:	n/a	n/a
22	ZNF143	chr9:115823965-115824155	H1-hESC	embryonic stem cell:	n/a	n/a
23	TEAD4	chr9:115823827-115824183	H1-hESC	embryonic stem cell:	n/a	n/a
24	SPI1	chr9:115824024-115824254	K562	blood:	n/a	n/a
25	JUND	chr9:115823875-115824062	H1-hESC	embryonic stem cell:	n/a	n/a
26	POU2F2	chr9:115823650-115824303	GM12878	blood:	n/a	n/a
27	YY1	chr9:115823827-115824155	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ZFP37	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv508563	chr9:115800632-115855728	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv6672	chr9:115811030-115856455	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv825051	chr9:115811606-115882022	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv825052	chr9:115811634-115882048	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv525545	chr9:115814473-115862852	ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv466492	chr9:115814473-115866273	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv615205	chr9:115814473-115866273	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv466493	chr9:115815398-115867276	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv615206	chr9:115815398-115867276	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv893734	chr9:115815398-115891009	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv2757353	chr9:115815398-115892245	ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv8562	chr9:115818667-115854598	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2753302	chr9:115819870-115888112	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	esv1826828	chr9:115820538-115853335	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1038932	chr9:115820554-115867512	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv20594	chr9:115820908-115855538	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv972802	chr9:115821036-115852008	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
23	esv3418153	chr9:115821131-115853729	Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3437370	chr9:115821231-115835029	Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	esv3395756	chr9:115821331-115853429	Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv1803683	chr9:115821845-115852353	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv1806930	chr9:115821845-115852353	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
28	esv1809073	chr9:115821845-115852353	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
29	esv1829272	chr9:115821845-115852353	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
30	esv1831283	chr9:115821845-115852353	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
31	nsv893735	chr9:115821854-115891009	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	esv3430587	chr9:115821931-115850829	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
33	esv3383727	chr9:115821931-115853429	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv3433695	chr9:115822131-115836129	Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115823400-115825400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr9:115823400-115825600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr9:115823400-115825600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr9:115823400-115825600	ZNF genes & repeats	Lung	lung
5	chr9:115823400-115825800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:115823600-115824400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:115823600-115824400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:115823600-115824400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr9:115823600-115825600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:115823600-115825600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
11	chr9:115823600-115825600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:115823600-115825600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:115823800-115824200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:115823800-115824200	Bivalent Enhancer	Brain Germinal Matrix	brain
15	chr9:115824000-115824200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
16	chr9:115824000-115824200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr9:115824000-115824200	Enhancers	Right Ventricle	heart

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