Variant report

Variant	rs62574623
Chromosome Location	chr9:101217087-101217088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11789046	1.00[AMR][1000 genomes]
rs62576025	1.00[AFR][1000 genomes]
rs72759681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101201000-101221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101204600-101218000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101205000-101218200	Weak transcription	Brain Angular Gyrus	brain
4	chr9:101214400-101217800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:101215800-101219000	Enhancers	HMEC	breast
6	chr9:101216000-101218800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:101216000-101219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:101216200-101218800	Enhancers	NHEK	skin
9	chr9:101216200-101219000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:101216400-101217400	Weak transcription	Osteobl	bone
11	chr9:101216400-101217800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:101216400-101218000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:101216400-101218000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:101216400-101218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:101216600-101218000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101216600-101218000	Weak transcription	NH-A	brain
17	chr9:101217000-101218800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links