Variant report

Variant	rs62577227
Chromosome Location	chr9:102810959-102810960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62577233	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62577240	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
3	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
5	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
7	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:102771400-102816200	Weak transcription	NH-A	brain
9	chr9:102778400-102813200	Weak transcription	HUVEC	blood vessel
10	chr9:102781800-102811000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:102782000-102813000	Weak transcription	HSMM	muscle
12	chr9:102782600-102812400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:102782600-102813200	Weak transcription	Placenta	Placenta
14	chr9:102783800-102814000	Weak transcription	Osteobl	bone
15	chr9:102783800-102819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:102784000-102813200	Weak transcription	NHEK	skin
17	chr9:102788600-102825600	Weak transcription	A549	lung
18	chr9:102791000-102813000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:102792800-102812800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:102793400-102813000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:102796400-102811000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:102796400-102813000	Weak transcription	Fetal Thymus	thymus
23	chr9:102796400-102826000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr9:102796800-102812800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:102796800-102813400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:102797200-102812800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr9:102797200-102815400	Weak transcription	HepG2	liver
29	chr9:102797400-102821000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:102797400-102827800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:102798600-102813400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:102799000-102812400	Weak transcription	Dnd41	blood
33	chr9:102799800-102811800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:102799800-102813000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:102800000-102811400	Weak transcription	Liver	Liver
36	chr9:102800000-102813000	Weak transcription	Left Ventricle	heart
37	chr9:102800000-102817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:102800000-102819200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:102800000-102820400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
41	chr9:102800000-102828800	Weak transcription	Gastric	stomach
42	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
43	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
45	chr9:102800200-102811000	Weak transcription	Lung	lung
46	chr9:102800200-102821200	Weak transcription	Ovary	ovary
47	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
49	chr9:102801800-102812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas

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