Variant report

Variant	rs62577500
Chromosome Location	chr9:118129247-118129248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4449863	0.84[AMR][1000 genomes]
rs59879497	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62577483	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62577502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7048610	0.84[AMR][1000 genomes]
rs72748109	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118119600-118135800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:118122600-118129400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:118122600-118130800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:118124800-118131200	Weak transcription	Fetal Lung	lung
5	chr9:118125400-118131400	Weak transcription	Fetal Kidney	kidney
6	chr9:118125600-118131200	Weak transcription	Fetal Stomach	stomach
7	chr9:118128600-118130000	Enhancers	Stomach Mucosa	stomach
8	chr9:118128600-118132200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:118128800-118129600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:118128800-118129800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:118128800-118130800	Enhancers	NH-A	brain
12	chr9:118128800-118131600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:118129000-118129600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:118129200-118131800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links