Variant report

Variant	rs62577870
Chromosome Location	chr9:136836146-136836147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136823911..136827460-chr9:136829913..136836528,5	MCF-7	breast:
2	chr9:136657372..136661309-chr9:136835277..136837863,3	MCF-7	breast:
3	chr9:136813341..136815906-chr9:136834550..136837034,2	MCF-7	breast:
4	chr9:136835959..136838306-chr9:136857880..136859486,2	MCF-7	breast:
5	chr9:136815804..136817789-chr9:136835631..136837132,2	MCF-7	breast:
6	chr9:136736947..136741233-chr9:136835339..136839101,5	MCF-7	breast:
7	chr9:136748871..136750946-chr9:136835211..136836752,2	MCF-7	breast:
8	chr9:136834881..136836986-chr9:136842097..136843877,2	MCF-7	breast:
9	chr9:136830027..136831727-chr9:136833822..136836269,2	MCF-7	breast:
10	chr9:136835900..136838442-chr9:136840312..136842040,2	K562	blood:

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3780794	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv982642	chr9:136819005-136837069	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv615743	chr9:136835343-136874158	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136822600-136837000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:136822800-136836600	Weak transcription	NHDF-Ad	bronchial
3	chr9:136824400-136836800	Weak transcription	NH-A	brain
4	chr9:136825600-136836800	Weak transcription	NHLF	lung
5	chr9:136826000-136839200	Weak transcription	Left Ventricle	heart
6	chr9:136828000-136836600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:136831800-136836200	Weak transcription	Liver	Liver
8	chr9:136832000-136840800	Enhancers	Primary B cells from cord blood	blood
9	chr9:136832400-136842400	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:136832600-136843800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:136832800-136844200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:136833000-136836200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:136833200-136839800	Enhancers	Fetal Brain Female	brain
14	chr9:136833400-136837800	Enhancers	NHEK	skin
15	chr9:136833600-136837400	Enhancers	Fetal Stomach	stomach
16	chr9:136833600-136839600	Enhancers	Fetal Brain Male	brain
17	chr9:136833600-136839800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:136833600-136839800	Enhancers	Fetal Muscle Leg	muscle
19	chr9:136833600-136842000	Enhancers	Pancreas	Pancrea
20	chr9:136833800-136837600	Enhancers	Placenta	Placenta
21	chr9:136833800-136839600	Enhancers	Brain Germinal Matrix	brain
22	chr9:136833800-136840200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:136834000-136838800	Enhancers	GM12878-XiMat	blood
24	chr9:136834000-136840000	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:136834000-136840400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:136834200-136837600	Enhancers	Esophagus	oesophagus
27	chr9:136834200-136840400	Enhancers	Spleen	Spleen
28	chr9:136834400-136837400	Enhancers	Lung	lung
29	chr9:136834400-136837600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr9:136834400-136838200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr9:136834600-136838600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:136834600-136839200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:136834800-136836800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:136835000-136836400	Weak transcription	HSMM	muscle
35	chr9:136835000-136839000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:136835000-136839800	Enhancers	Gastric	stomach
37	chr9:136835000-136840000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr9:136835200-136836400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:136835200-136836800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:136835200-136848600	Enhancers	Fetal Intestine Large	intestine
41	chr9:136835400-136836400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:136835400-136836600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:136835400-136836600	Enhancers	Right Ventricle	heart
44	chr9:136835400-136837000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:136835400-136840000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr9:136835400-136848800	Genic enhancers	Fetal Intestine Small	intestine
47	chr9:136835600-136836600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:136835600-136836600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:136835600-136836600	Weak transcription	HMEC	breast
50	chr9:136835600-136837000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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