Variant report

Variant	rs62578803
Chromosome Location	chr9:96976391-96976392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96773554..96776449-chr9:96974238..96977177,2	MCF-7	breast:
2	chr9:96827200..96828396-chr9:96975283..96976482,6	MCF-7	breast:
3	chr9:96776042..96777028-chr9:96975491..96976419,9	MCF-7	breast:
4	chr9:96941289..96943045-chr9:96974462..96976408,2	K562	blood:
5	chr9:96776018..96777153-chr9:96975464..96976521,5	MCF-7	breast:
6	chr9:96727836..96728378-chr9:96975555..96976476,2	MCF-7	breast:
7	chr9:96789976..96794362-chr9:96971656..96977390,6	MCF-7	breast:
8	chr9:96975962..96978942-chr9:96988831..96990467,2	MCF-7	breast:
9	chr9:96725158..96725897-chr9:96975460..96976466,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62578776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62579670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
4	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96974400-96976400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:96974400-96976600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:96975400-96978400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96976000-96976400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:96976000-96976400	Enhancers	Primary B cells from cord blood	blood
6	chr9:96976000-96976400	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:96976000-96976400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:96976000-96976400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:96976000-96976400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:96976000-96976400	Enhancers	Colon Smooth Muscle	Colon
11	chr9:96976000-96976400	Bivalent Enhancer	Stomach Mucosa	stomach
12	chr9:96976000-96976400	Enhancers	Dnd41	blood
13	chr9:96976000-96976400	Enhancers	HepG2	liver
14	chr9:96976200-96976400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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