Variant report

Variant	rs62617792
Chromosome Location	chr9:105951437-105951438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10820387	0.86[ASN][1000 genomes]
rs10990602	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10990606	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12551363	0.84[ASN][1000 genomes]
rs1375208	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7035230	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7869559	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466455	chr9:105707984-105999196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv516844	chr9:105718090-105999196	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1046469	chr9:105725107-105981616	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv540187	chr9:105725107-105981616	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv615042	chr9:105929592-105974754	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv893660	chr9:105942389-106068965	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv893661	chr9:105942389-106076270	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv893662	chr9:105947343-106068965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105950800-105951600	Enhancers	Aorta	Aorta
2	chr9:105951000-105951600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:105951200-105951600	Enhancers	Adipose Nuclei	Adipose
4	chr9:105951200-105951600	Enhancers	Brain Anterior Caudate	brain
5	chr9:105951200-105951600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:105951200-105951600	Enhancers	Fetal Muscle Leg	muscle
7	chr9:105951200-105951600	Enhancers	Pancreas	Pancrea
8	chr9:105951200-105951800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:105951400-105951600	Flanking Active TSS	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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