Variant report

Variant	rs62621875
Chromosome Location	chr13:111143681-111143682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73621084	1.00[AMR][1000 genomes]
rs74124609	1.00[AMR][1000 genomes]
rs74124618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv430604	chr13:111095999-111156999	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046291	chr13:111125747-111257861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1045143	chr13:111126822-111242791	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv901009	chr13:111134780-111176393	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111108600-111149200	Strong transcription	Fetal Stomach	stomach
2	chr13:111108600-111150600	Weak transcription	NHDF-Ad	bronchial
3	chr13:111108800-111148800	Weak transcription	Brain Angular Gyrus	brain
4	chr13:111108800-111152200	Strong transcription	Fetal Intestine Small	intestine
5	chr13:111109000-111158800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:111109600-111155800	Strong transcription	Fetal Intestine Large	intestine
7	chr13:111109600-111158800	Strong transcription	Ovary	ovary
8	chr13:111109800-111152600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:111109800-111168000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:111117200-111152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:111119200-111150400	Weak transcription	Brain Anterior Caudate	brain
12	chr13:111119200-111159200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:111119600-111160400	Weak transcription	Brain Germinal Matrix	brain
14	chr13:111124200-111144600	Weak transcription	Liver	Liver
15	chr13:111124400-111152000	Strong transcription	Osteobl	bone
16	chr13:111124400-111167400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:111125600-111157800	Weak transcription	Small Intestine	intestine
18	chr13:111127400-111147400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr13:111127400-111148200	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:111127400-111148600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr13:111127600-111144600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr13:111127600-111148600	Strong transcription	Lung	lung
23	chr13:111127600-111153000	Weak transcription	Brain Substantia Nigra	brain
24	chr13:111127600-111156200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr13:111127800-111147800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr13:111128800-111146000	Strong transcription	Fetal Lung	lung
27	chr13:111130600-111155400	Strong transcription	Left Ventricle	heart
28	chr13:111131000-111149200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr13:111131000-111151200	Weak transcription	Right Atrium	heart
30	chr13:111131000-111151800	Strong transcription	HUVEC	blood vessel
31	chr13:111131000-111162800	Weak transcription	Fetal Brain Male	brain
32	chr13:111131400-111158000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:111131800-111159400	Weak transcription	Esophagus	oesophagus
34	chr13:111132200-111151800	Strong transcription	Adipose Nuclei	Adipose
35	chr13:111132200-111152200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:111132200-111158400	Strong transcription	Colon Smooth Muscle	Colon
37	chr13:111132200-111158600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:111135600-111148600	Weak transcription	Fetal Kidney	kidney
39	chr13:111136200-111149000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr13:111138400-111148600	Weak transcription	A549	lung
41	chr13:111138800-111144200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr13:111138800-111146800	Weak transcription	HSMM	muscle
43	chr13:111138800-111147400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr13:111138800-111155400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr13:111139400-111148000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:111139600-111144400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr13:111139600-111157800	Strong transcription	Placenta	Placenta
48	chr13:111139600-111166400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:111139600-111166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr13:111139800-111145400	Strong transcription	Muscle Satellite Cultured Cells	--

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