Variant report

Variant	rs62622023
Chromosome Location	chr3:105271149-105271150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35271455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1008291	chr3:105261480-105272449	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105221400-105300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105223800-105274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:105232200-105274000	Weak transcription	HSMMtube	muscle
4	chr3:105234600-105274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:105237800-105274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:105237800-105275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:105242000-105293600	Weak transcription	Lung	lung
8	chr3:105242400-105280400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:105244800-105275800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:105246600-105284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:105248000-105281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:105248400-105291200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:105249400-105278600	Weak transcription	Small Intestine	intestine
14	chr3:105249800-105284000	Weak transcription	Fetal Stomach	stomach
15	chr3:105249800-105285200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:105251800-105274400	Weak transcription	Dnd41	blood
17	chr3:105253200-105273000	Weak transcription	Gastric	stomach
18	chr3:105254000-105273000	Weak transcription	Fetal Lung	lung
19	chr3:105254800-105279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:105257400-105272400	Weak transcription	NHDF-Ad	bronchial
21	chr3:105257800-105271400	Weak transcription	Stomach Mucosa	stomach
22	chr3:105258000-105274600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr3:105258600-105273600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:105258800-105271800	Strong transcription	HUVEC	blood vessel
25	chr3:105258800-105274400	Strong transcription	Liver	Liver
26	chr3:105258800-105274400	Strong transcription	NH-A	brain
27	chr3:105259000-105271200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:105259000-105273400	Strong transcription	Osteobl	bone
29	chr3:105259400-105272200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:105259400-105272400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:105259400-105272600	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr3:105259400-105274000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:105259400-105274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:105259400-105281200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:105259800-105272400	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:105260800-105297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:105260800-105299800	Weak transcription	Pancreas	Pancrea
38	chr3:105261800-105272400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:105262400-105274200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:105263000-105274200	Weak transcription	Fetal Kidney	kidney
41	chr3:105263000-105295400	Weak transcription	Brain Angular Gyrus	brain
42	chr3:105263200-105271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:105263400-105271200	Weak transcription	Aorta	Aorta
44	chr3:105264400-105273400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr3:105264600-105273600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:105265400-105273000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:105265800-105274000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:105267200-105271200	Weak transcription	Ovary	ovary
49	chr3:105267200-105274600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:105267600-105271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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