Variant report

Variant	rs62623665
Chromosome Location	chr19:44635822-44635823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44635509..44637691-chr19:44639057..44641237,2	K562	blood:
2	chr19:44635011..44637758-chr19:44680578..44683004,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16978732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445506	0.97[EUR][1000 genomes]
rs41360748	1.00[EUR][1000 genomes]
rs7249904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44619600-44637200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr19:44619600-44638600	ZNF genes & repeats	Liver	Liver
3	chr19:44622800-44636800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:44622800-44645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:44623400-44637200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:44623400-44637800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:44623400-44638800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:44623800-44640600	Weak transcription	HepG2	liver
9	chr19:44624200-44637400	ZNF genes & repeats	Fetal Lung	lung
10	chr19:44625400-44639000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr19:44626000-44637000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:44626200-44636000	Strong transcription	Brain Angular Gyrus	brain
13	chr19:44626800-44636600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr19:44627600-44636000	Strong transcription	Brain Anterior Caudate	brain
15	chr19:44628600-44636400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr19:44628800-44636000	Strong transcription	Placenta Amnion	Placenta Amnion
17	chr19:44628800-44636800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
18	chr19:44628800-44636800	Strong transcription	Dnd41	blood
19	chr19:44630000-44636000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr19:44630000-44636400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:44630000-44636800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr19:44630200-44636400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
23	chr19:44630200-44636800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr19:44630200-44636800	ZNF genes & repeats	Ovary	ovary
25	chr19:44630200-44637000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:44630400-44636400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr19:44630400-44636800	ZNF genes & repeats	Aorta	Aorta
28	chr19:44630400-44637200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:44630400-44637200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr19:44630600-44637600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:44630600-44645000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr19:44631000-44636600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr19:44631000-44637200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:44631200-44639200	ZNF genes & repeats	Psoas Muscle	Psoas
35	chr19:44631400-44636600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr19:44632200-44636600	Strong transcription	Fetal Intestine Large	intestine
37	chr19:44632200-44637000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:44632200-44637600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr19:44632400-44636800	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr19:44632600-44637600	ZNF genes & repeats	A549	lung
41	chr19:44632800-44636000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
42	chr19:44632800-44636800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr19:44633000-44637000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
44	chr19:44633000-44637800	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr19:44633200-44637000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
46	chr19:44633200-44637000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
47	chr19:44633400-44636000	Strong transcription	Fetal Thymus	thymus
48	chr19:44633600-44636800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr19:44633600-44636800	ZNF genes & repeats	Left Ventricle	heart
50	chr19:44633600-44638600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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