Variant report

Variant	rs62637956
Chromosome Location	chr2:95705097-95705098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3105098	0.80[ASN][1000 genomes]
rs3105099	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3113002	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000661	chr2:95327875-95739468	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1003666	chr2:95618109-95772924	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv3326687	chr2:95700225-95708023	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3444058	chr2:95700825-95707523	Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95693400-95706400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr2:95696000-95706800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:95698400-95710400	Enhancers	Brain Substantia Nigra	brain
4	chr2:95699000-95708200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:95699200-95710000	Enhancers	Brain Anterior Caudate	brain
6	chr2:95700000-95710200	Enhancers	Brain Cingulate Gyrus	brain
7	chr2:95700200-95708000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:95700200-95709000	Enhancers	Brain Hippocampus Middle	brain
9	chr2:95700400-95709000	Weak transcription	Dnd41	blood
10	chr2:95701200-95708200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr2:95701800-95706800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:95702400-95705200	Weak transcription	Lung	lung
13	chr2:95702400-95705400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:95702400-95705600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr2:95702400-95705800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:95702600-95706200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:95702600-95707800	Weak transcription	Pancreas	Pancrea
18	chr2:95702600-95711200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:95703000-95705800	Weak transcription	Thymus	Thymus
20	chr2:95703000-95706200	Enhancers	Gastric	stomach
21	chr2:95703000-95707400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr2:95703000-95712400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:95703200-95705400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr2:95703600-95705600	Weak transcription	Right Ventricle	heart
25	chr2:95704400-95705800	Enhancers	Fetal Thymus	thymus
26	chr2:95704400-95706600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr2:95704600-95706200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:95704600-95707600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr2:95704600-95707800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr2:95704600-95708200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:95704800-95705200	Weak transcription	Fetal Kidney	kidney
32	chr2:95704800-95705600	Genic enhancers	Primary T cells from cord blood	blood
33	chr2:95704800-95705800	Enhancers	Esophagus	oesophagus
34	chr2:95704800-95706000	Enhancers	Brain Angular Gyrus	brain
35	chr2:95705000-95705400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:95705000-95705600	Enhancers	Stomach Mucosa	stomach

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