Variant report

Variant	rs62639087
Chromosome Location	chr7:101006739-101006740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100964710..100967141-chr7:101003077..101007417,4	MCF-7	breast:
2	chr7:101006441..101008974-chr7:101023704..101025266,2	MCF-7	breast:
3	chr7:101006530..101007875-chr7:101054200..101055148,9	MCF-7	breast:
4	chr7:101006510..101007838-chr7:101150604..101151700,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128581	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1010353	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1010354	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10227033	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10228118	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10228469	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10232897	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10232921	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10234346	0.83[EUR][1000 genomes]
rs10254581	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10261809	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10953334	0.82[EUR][1000 genomes]
rs10953336	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10953337	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10953338	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10953339	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10953340	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11976450	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12532346	0.81[AMR][1000 genomes]
rs12539948	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12666374	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12670704	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12671124	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12673177	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12673743	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13226176	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13228295	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13229821	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13235901	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13238944	0.83[AMR][1000 genomes]
rs13242788	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13243027	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13243416	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13246653	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17453425	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2410823	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2410824	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2898575	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34825981	0.82[EUR][1000 genomes]
rs35287067	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35571793	0.80[AMR][1000 genomes]
rs35761702	0.80[AMR][1000 genomes]
rs36038216	0.80[AMR][1000 genomes]
rs4236556	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4257954	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4473960	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4473961	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4478499	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4568540	0.81[EUR][1000 genomes]
rs4727487	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4727488	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4727489	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4727490	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729693	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729694	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729695	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729697	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729698	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729699	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729700	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4989266	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4989267	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4989268	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4989269	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4989270	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4989271	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4989272	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55815848	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56045466	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56206210	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58252552	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59412968	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62465608	0.80[AMR][1000 genomes]
rs62465625	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6465798	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6465799	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6465801	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6465802	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6465803	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6465804	0.82[EUR][1000 genomes]
rs66510359	0.81[AMR][1000 genomes]
rs66606106	0.80[AMR][1000 genomes]
rs66656437	0.80[AMR][1000 genomes]
rs6943255	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6943474	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6945102	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6952218	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6956224	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6958770	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6963365	0.83[EUR][1000 genomes]
rs6965312	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6965654	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6965814	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6974909	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6976146	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71559410	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7776842	0.80[AMR][1000 genomes]
rs7782256	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7793499	0.80[AMR][1000 genomes]
rs7794015	0.80[AMR][1000 genomes]
rs7796766	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs950513	0.83[EUR][1000 genomes]
rs950514	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs950515	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv1023393	chr7:100904333-101102046	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv2752135	chr7:100932330-101135565	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv2752136	chr7:100932330-101143259	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1017098	chr7:100935631-101117541	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv539042	chr7:100935631-101117541	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv2752137	chr7:100938008-101135398	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1028170	chr7:100958058-101117541	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv539043	chr7:100958058-101117541	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv517175	chr7:100960550-101138286	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1034896	chr7:100961416-101135398	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1019056	chr7:100961416-101137314	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv1024423	chr7:100963863-101128424	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv1033659	chr7:100963863-101135398	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1018124	chr7:100963863-101137314	Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1017544	chr7:100965601-101116322	Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv1029050	chr7:100965601-101127455	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1017844	chr7:100965601-101128424	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1022477	chr7:100965601-101135398	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv1026450	chr7:100965601-101137314	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1030543	chr7:100967086-101116322	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv1019282	chr7:100967086-101120515	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv1018915	chr7:100967086-101123415	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv1016531	chr7:100967086-101127455	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
31	nsv1018135	chr7:100967086-101128424	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1019142	chr7:100967086-101135398	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv1019605	chr7:100967086-101137314	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
34	nsv1023475	chr7:100967086-101143259	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
35	esv2761351	chr7:100967098-101135398	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv607979	chr7:100968363-101029430	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
37	nsv1022652	chr7:100968363-101116322	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
38	nsv1034171	chr7:100968363-101126281	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
39	esv2829878	chr7:100968363-101127455	Genic enhancers Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
40	esv2830177	chr7:100968363-101127455	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	esv3693369	chr7:100968363-101127455	Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
42	nsv1024733	chr7:100968363-101127455	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
43	nsv464653	chr7:100968363-101127455	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv464654	chr7:100968363-101127455	Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv464655	chr7:100968363-101127455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
46	nsv464656	chr7:100968363-101127455	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
47	nsv464657	chr7:100968363-101127455	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
48	nsv464658	chr7:100968363-101127455	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv464659	chr7:100968363-101127455	Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
50	nsv607980	chr7:100968363-101127455	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62639087	COL26A1	cis	lung	GTEx
rs62639087	COL26A1	cis	Stomach	GTEx

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100996600-101007000	Weak transcription	Hela-S3	cervix
2	chr7:101005000-101008000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:101005200-101007400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
4	chr7:101005200-101007800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:101005200-101007800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:101005400-101007600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:101005600-101007000	Enhancers	Liver	Liver
8	chr7:101005600-101007000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr7:101005600-101007400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:101005600-101007400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:101005600-101007400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr7:101005600-101007600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:101005600-101007600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:101005600-101007600	Active TSS	Brain Angular Gyrus	brain
15	chr7:101005800-101007000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:101005800-101007400	Active TSS	Brain Anterior Caudate	brain
17	chr7:101005800-101007600	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr7:101005800-101007800	Active TSS	H1 Cell Line	embryonic stem cell
19	chr7:101006000-101007000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr7:101006000-101007000	Weak transcription	Fetal Kidney	kidney
21	chr7:101006000-101007000	Active TSS	Right Ventricle	heart
22	chr7:101006000-101007000	Active TSS	Stomach Smooth Muscle	stomach
23	chr7:101006000-101007200	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr7:101006000-101007200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
25	chr7:101006000-101007200	Active TSS	Right Atrium	heart
26	chr7:101006000-101007400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:101006000-101007400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:101006000-101007400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:101006000-101007400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr7:101006000-101007400	Active TSS	HepG2	liver
31	chr7:101006000-101007600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr7:101006000-101007600	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr7:101006000-101007600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr7:101006000-101007600	Active TSS	A549	lung
35	chr7:101006000-101007800	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr7:101006000-101007800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr7:101006000-101007800	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr7:101006200-101006800	Weak transcription	Aorta	Aorta
39	chr7:101006200-101007000	Enhancers	Primary B cells from cord blood	blood
40	chr7:101006200-101007000	Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr7:101006200-101007000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr7:101006200-101007000	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:101006200-101007000	Bivalent/Poised TSS	Colonic Mucosa	Colon
44	chr7:101006200-101007000	Bivalent/Poised TSS	Fetal Stomach	stomach
45	chr7:101006200-101007000	Bivalent/Poised TSS	Left Ventricle	heart
46	chr7:101006200-101007000	Active TSS	Pancreas	Pancrea
47	chr7:101006200-101007000	Active TSS	Psoas Muscle	Psoas
48	chr7:101006200-101007000	Bivalent/Poised TSS	Thymus	Thymus
49	chr7:101006200-101007400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:101006200-101007600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links