Variant report

Variant	rs62639529
Chromosome Location	chr14:106156290-106156291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62639530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106147600-106159000	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:106153000-106158200	Enhancers	Primary B cells from cord blood	blood
3	chr14:106153600-106156800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr14:106154000-106158200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:106155200-106157600	Active TSS	Fetal Heart	heart
6	chr14:106155200-106157600	ZNF genes & repeats	Fetal Lung	lung
7	chr14:106155200-106158400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr14:106155400-106157600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:106155600-106157200	Weak transcription	Spleen	Spleen
10	chr14:106155600-106158600	Enhancers	GM12878-XiMat	blood
11	chr14:106156000-106157600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:106156000-106157600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr14:106156200-106157400	ZNF genes & repeats	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links