Variant report

Variant	rs62642487
Chromosome Location	chr11:108040522-108040523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35504388	1.00[AMR][1000 genomes]
rs4987913	1.00[AMR][1000 genomes]
rs4988014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108002800-108048000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:108003600-108040800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:108005800-108040800	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr11:108009000-108041000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:108009400-108062600	Strong transcription	Primary T cells from cord blood	blood
9	chr11:108009400-108068400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:108009600-108041800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr11:108009600-108049000	Strong transcription	Placenta	Placenta
12	chr11:108009600-108068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:108009800-108048000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:108010800-108041400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:108010800-108041800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:108010800-108049200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:108011600-108044200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:108011800-108047800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:108015600-108045000	Weak transcription	Stomach Mucosa	stomach
21	chr11:108017000-108075000	Strong transcription	Dnd41	blood
22	chr11:108018200-108040600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:108019000-108043800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:108022800-108043000	Weak transcription	Colonic Mucosa	Colon
25	chr11:108022800-108052600	Weak transcription	Spleen	Spleen
26	chr11:108023000-108053000	Weak transcription	Pancreas	Pancrea
27	chr11:108023000-108055400	Weak transcription	Esophagus	oesophagus
28	chr11:108023800-108041000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:108023800-108053200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:108024600-108047600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:108025600-108041600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:108025800-108041000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
35	chr11:108026600-108040800	Weak transcription	NHLF	lung
36	chr11:108026600-108047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:108027000-108069800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr11:108028000-108041000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:108028800-108041800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:108028800-108068000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:108029200-108067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:108029400-108041800	Strong transcription	Brain Germinal Matrix	brain
44	chr11:108029600-108040800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:108029600-108043400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:108030000-108041400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:108030000-108048800	Strong transcription	Fetal Intestine Large	intestine
48	chr11:108031200-108040600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:108031600-108041000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:108032400-108044200	Weak transcription	Brain Inferior Temporal Lobe	brain

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