Variant report

Variant	rs626929
Chromosome Location	chr11:16386270-16386271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16373495..16376381-chr11:16385649..16387640,2	K562	blood:
2	chr11:16364977..16366549-chr11:16384856..16387752,2	K562	blood:
3	chr11:16378328..16381212-chr11:16385744..16387907,4	K562	blood:
4	chr11:16383712..16391203-chr11:16391970..16396695,10	K562	blood:
5	chr11:16377809..16381179-chr11:16381397..16386476,5	K562	blood:
6	chr11:16384106..16387046-chr11:16399381..16401065,2	K562	blood:
7	chr11:16381508..16383531-chr11:16385796..16387434,2	K562	blood:
8	chr11:16372882..16374995-chr11:16384408..16387149,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10766319	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs297324	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs297326	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs626927	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16379000-16387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:16379200-16387400	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:16379800-16386600	Weak transcription	Fetal Brain Female	brain
4	chr11:16380400-16387200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:16385000-16387600	Enhancers	Fetal Heart	heart
6	chr11:16385000-16389200	Enhancers	Fetal Intestine Large	intestine
7	chr11:16385000-16390200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16385400-16386400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:16385400-16388200	Enhancers	Fetal Intestine Small	intestine
10	chr11:16385800-16386400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:16385800-16386600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:16385800-16388000	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:16386000-16386400	Flanking Active TSS	K562	blood
14	chr11:16386000-16387200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:16386000-16387200	Weak transcription	Small Intestine	intestine
16	chr11:16386000-16387600	Weak transcription	Right Atrium	heart
17	chr11:16386000-16388200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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