Variant report

Variant	rs627085
Chromosome Location	chr9:92824422-92824423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1036701	0.83[AFR][1000 genomes]
rs287860	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs287862	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs599721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs614484	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92817800-92826000	Weak transcription	Liver	Liver
2	chr9:92822800-92824600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:92824000-92824800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:92824200-92824600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:92824200-92824600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:92824200-92824600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:92824200-92824800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:92824200-92824800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:92824200-92825000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:92824400-92824800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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