Variant report

Variant	rs627603
Chromosome Location	chr13:110915187-110915188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs476241	0.80[ASN][1000 genomes]
rs497888	0.86[ASN][1000 genomes]
rs554882	0.84[ASN][1000 genomes]
rs572713	0.81[ASN][1000 genomes]
rs627527	0.92[EUR][1000 genomes]
rs669398	0.88[ASN][1000 genomes]
rs686642	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110900000-110916200	Weak transcription	A549	lung
2	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
3	chr13:110904200-110918200	Weak transcription	Pancreas	Pancrea
4	chr13:110909200-110917800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:110911200-110915200	Enhancers	Adipose Nuclei	Adipose
6	chr13:110911200-110915800	Enhancers	NHEK	skin
7	chr13:110911200-110917200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:110911600-110916200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:110911800-110918800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:110912200-110915800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
13	chr13:110912400-110915200	Weak transcription	HMEC	breast
14	chr13:110912400-110917800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110912400-110919600	Enhancers	NHDF-Ad	bronchial
16	chr13:110912800-110917000	Weak transcription	Osteobl	bone
17	chr13:110912800-110917200	Enhancers	Placenta	Placenta
18	chr13:110913000-110915600	Weak transcription	Aorta	Aorta
19	chr13:110913200-110917200	Enhancers	Fetal Muscle Leg	muscle
20	chr13:110913400-110915200	Enhancers	NH-A	brain
21	chr13:110913400-110915400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:110913400-110920200	Enhancers	Fetal Heart	heart
23	chr13:110913600-110915200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr13:110913600-110915200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr13:110913600-110915400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr13:110913600-110916400	Enhancers	Right Ventricle	heart
27	chr13:110913600-110917400	Enhancers	Fetal Intestine Large	intestine
28	chr13:110913800-110915200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr13:110913800-110915200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:110913800-110915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:110913800-110916000	Enhancers	HSMM	muscle
32	chr13:110913800-110916600	Enhancers	Small Intestine	intestine
33	chr13:110913800-110917400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr13:110914000-110915400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:110914000-110915600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:110914000-110915600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:110914000-110915600	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr13:110914000-110915800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr13:110914000-110917000	Enhancers	Fetal Intestine Small	intestine
40	chr13:110914000-110917400	Enhancers	Colonic Mucosa	Colon
41	chr13:110914000-110917800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr13:110914000-110917800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr13:110914000-110917800	Enhancers	Fetal Stomach	stomach
44	chr13:110914000-110918000	Enhancers	Ovary	ovary
45	chr13:110914000-110918400	Enhancers	Lung	lung
46	chr13:110914000-110922600	Enhancers	Right Atrium	heart
47	chr13:110914200-110915400	Enhancers	H9 Cell Line	embryonic stem cell
48	chr13:110914200-110917200	Enhancers	Fetal Lung	lung
49	chr13:110914200-110918200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr13:110914400-110915200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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