Variant report

Variant	rs628577
Chromosome Location	chr6:150748812-150748813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3860826	0.82[ASN][1000 genomes]
rs4869908	0.82[ASN][1000 genomes]
rs618002	0.86[ASN][1000 genomes]
rs643956	0.87[ASN][1000 genomes]
rs6922600	0.82[ASN][1000 genomes]
rs7769234	0.82[ASN][1000 genomes]
rs810958	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs628577	VIP	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150740600-150757200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150747000-150757400	Weak transcription	Gastric	stomach
3	chr6:150747400-150749000	Enhancers	Spleen	Spleen
4	chr6:150747400-150750800	Enhancers	Fetal Kidney	kidney
5	chr6:150747600-150749000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:150747800-150750200	Weak transcription	Fetal Lung	lung
7	chr6:150747800-150757600	Weak transcription	Right Atrium	heart
8	chr6:150748000-150750000	Weak transcription	Liver	Liver
9	chr6:150748200-150749000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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