Variant report

Variant	rs629699
Chromosome Location	chr18:8835869-8835870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8834969..8836760-chr18:8839023..8841481,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11081410	0.81[JPT][hapmap]
rs12962890	0.81[JPT][hapmap]
rs2170297	0.81[JPT][hapmap]
rs2242273	0.81[JPT][hapmap]
rs594490	0.92[EUR][1000 genomes]
rs595802	0.91[CHD][hapmap];0.81[JPT][hapmap]
rs617061	0.92[EUR][1000 genomes]
rs7233770	0.81[JPT][hapmap]
rs7240816	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8822400-8836800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:8826200-8839600	Weak transcription	Brain Angular Gyrus	brain
3	chr18:8826400-8841600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:8827600-8839000	Weak transcription	Pancreas	Pancrea
5	chr18:8828400-8837000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:8829200-8839000	Weak transcription	Fetal Brain Male	brain
7	chr18:8829200-8839000	Weak transcription	Gastric	stomach
8	chr18:8832800-8841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr18:8834400-8836000	Enhancers	Fetal Muscle Leg	muscle
10	chr18:8834600-8836000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:8834600-8836000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr18:8834600-8836000	Enhancers	Colon Smooth Muscle	Colon
13	chr18:8834600-8836000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr18:8834600-8836000	Enhancers	K562	blood
15	chr18:8834600-8836000	Enhancers	Osteobl	bone
16	chr18:8834600-8836200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr18:8834600-8836200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr18:8834600-8836400	Enhancers	HSMM	muscle
19	chr18:8834800-8836000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr18:8834800-8836000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr18:8834800-8836000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr18:8834800-8836000	Enhancers	HMEC	breast
23	chr18:8834800-8836200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr18:8834800-8836200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr18:8834800-8836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:8834800-8836200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr18:8835000-8836000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr18:8835000-8836000	Enhancers	Rectal Smooth Muscle	rectum
29	chr18:8835200-8836000	Enhancers	Fetal Muscle Trunk	muscle
30	chr18:8835400-8836600	Enhancers	HSMMtube	muscle
31	chr18:8835600-8836000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr18:8835600-8839400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr18:8835800-8836600	Enhancers	Stomach Smooth Muscle	stomach
34	chr18:8835800-8837200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr18:8835800-8844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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