Variant report

Variant	rs629703
Chromosome Location	chr11:107434385-107434386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107434069..107435069-chr11:107559704..107560955,5	K562	blood:
2	chr11:107434249..107434771-chr11:107560082..107560724,2	MCF-7	breast:
3	chr11:107421430..107424256-chr11:107432325..107434776,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34011090	1.00[AMR][1000 genomes]
rs487086	1.00[AMR][1000 genomes]
rs543211	1.00[AMR][1000 genomes]
rs567957	1.00[AMR][1000 genomes]
rs604866	1.00[AMR][1000 genomes]
rs627421	1.00[AMR][1000 genomes]
rs632664	1.00[AMR][1000 genomes]
rs646771	1.00[AMR][1000 genomes]
rs674415	1.00[AMR][1000 genomes]
rs683890	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107372000-107435600	Weak transcription	Colonic Mucosa	Colon
2	chr11:107372800-107434600	Weak transcription	Placenta	Placenta
3	chr11:107376600-107434600	Weak transcription	Lung	lung
4	chr11:107376800-107434600	Weak transcription	Psoas Muscle	Psoas
5	chr11:107389800-107434600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:107389800-107435600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:107399800-107435600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:107403000-107434600	Weak transcription	Fetal Thymus	thymus
9	chr11:107407200-107434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:107408000-107434600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:107408200-107435800	Weak transcription	Gastric	stomach
12	chr11:107409600-107434600	Weak transcription	HepG2	liver
13	chr11:107416200-107434600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:107419600-107434600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:107421400-107434600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:107421400-107435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:107421600-107434400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:107421600-107434600	Weak transcription	Aorta	Aorta
19	chr11:107421600-107434600	Weak transcription	Esophagus	oesophagus
20	chr11:107421600-107434600	Weak transcription	Right Ventricle	heart
21	chr11:107421600-107434800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:107421600-107435400	Weak transcription	Thymus	Thymus
23	chr11:107421600-107435800	Weak transcription	Spleen	Spleen
24	chr11:107421800-107434400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:107421800-107434600	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:107421800-107434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:107422200-107434600	Weak transcription	Brain Germinal Matrix	brain
28	chr11:107422200-107434600	Weak transcription	Brain Substantia Nigra	brain
29	chr11:107422200-107434600	Weak transcription	Fetal Stomach	stomach
30	chr11:107422200-107434600	Weak transcription	Ovary	ovary
31	chr11:107422400-107434600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:107424400-107434400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:107424400-107434600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:107424800-107435600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:107425000-107434600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:107425000-107434800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:107425400-107434600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:107425800-107434400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:107426200-107434600	Weak transcription	Left Ventricle	heart
40	chr11:107426600-107434600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:107427000-107434400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:107427400-107434600	Weak transcription	Liver	Liver
43	chr11:107427600-107434400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:107429400-107434600	Weak transcription	Brain Anterior Caudate	brain
45	chr11:107430400-107434600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:107430400-107434600	Weak transcription	Fetal Intestine Large	intestine
47	chr11:107430400-107435600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:107430600-107435600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:107430800-107434600	Weak transcription	Adipose Nuclei	Adipose
50	chr11:107430800-107434800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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