Variant report

Variant	rs631673
Chromosome Location	chr13:30700924-30700925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30687723..30690408-chr13:30699734..30701487,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs472160	1.00[AMR][1000 genomes]
rs501877	1.00[AMR][1000 genomes]
rs501911	1.00[AMR][1000 genomes]
rs506517	1.00[AMR][1000 genomes]
rs509729	1.00[AMR][1000 genomes]
rs537597	1.00[AMR][1000 genomes]
rs56292131	1.00[AMR][1000 genomes]
rs564949	1.00[AMR][1000 genomes]
rs58662887	1.00[AMR][1000 genomes]
rs60673071	1.00[AMR][1000 genomes]
rs658913	1.00[AMR][1000 genomes]
rs663161	1.00[AMR][1000 genomes]
rs683993	1.00[AMR][1000 genomes]
rs74043017	1.00[AMR][1000 genomes]
rs74043029	1.00[AMR][1000 genomes]
rs74043047	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30694400-30707000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30695000-30701000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr13:30696400-30707000	Weak transcription	Thymus	Thymus
4	chr13:30696600-30702800	Weak transcription	Fetal Thymus	thymus
5	chr13:30697800-30702200	Enhancers	Colon Smooth Muscle	Colon
6	chr13:30697800-30702600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:30698200-30701800	Enhancers	Stomach Smooth Muscle	stomach
8	chr13:30698200-30702400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:30698400-30701600	Enhancers	Rectal Smooth Muscle	rectum
10	chr13:30698400-30701800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:30699400-30701400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:30699400-30701400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:30699400-30701600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:30699400-30701800	Enhancers	NHLF	lung
15	chr13:30699400-30701800	Enhancers	Osteobl	bone
16	chr13:30699400-30702000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:30699600-30701400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:30699600-30701400	Enhancers	NHDF-Ad	bronchial
19	chr13:30699600-30701600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:30699800-30701000	Weak transcription	Gastric	stomach
21	chr13:30700200-30707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:30700200-30708000	Weak transcription	NH-A	brain
23	chr13:30700200-30717200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:30700400-30701200	Enhancers	Ovary	ovary
25	chr13:30700400-30702000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:30700600-30701400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:30700600-30702200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:30700800-30701000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:30700800-30702400	Enhancers	Fetal Heart	heart
30	chr13:30700800-30702400	Enhancers	Stomach Mucosa	stomach
31	chr13:30700800-30706800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links