Variant report

Variant	rs633931
Chromosome Location	chr18:10133804-10133805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs563115	0.96[ASN][1000 genomes]
rs566556	0.92[JPT][hapmap]
rs604136	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630147	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064540	chr18:9995045-10133804	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10130000-10135000	Weak transcription	NHDF-Ad	bronchial
2	chr18:10131800-10135000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr18:10132200-10135200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr18:10132400-10134200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:10132400-10134600	Enhancers	Fetal Thymus	thymus
6	chr18:10132400-10137400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr18:10132400-10138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:10132400-10139800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:10132600-10134600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:10132600-10136000	Weak transcription	NHEK	skin
11	chr18:10132600-10139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr18:10132600-10139800	Weak transcription	HSMM	muscle
13	chr18:10133000-10134600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:10133000-10139800	Weak transcription	Pancreas	Pancrea
15	chr18:10133400-10134000	Enhancers	Fetal Muscle Trunk	muscle
16	chr18:10133400-10134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:10133400-10140400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:10133600-10134000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr18:10133800-10134400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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