Variant report

Variant	rs634299
Chromosome Location	chr17:38655155-38655156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38597908..38601053-chr17:38654458..38659532,5	MCF-7	breast:
2	chr17:38654631..38657600-chr17:38717597..38719399,2	MCF-7	breast:
3	chr17:38653905..38655672-chr17:38666687..38669670,2	MCF-7	breast:
4	chr17:38653160..38655925-chr17:38703995..38706258,2	MCF-7	breast:
5	chr17:38653701..38656623-chr17:38703547..38705327,2	MCF-7	breast:
6	chr17:38650172..38654327-chr17:38654681..38657235,5	K562	blood:
7	chr17:38652390..38654327-chr17:38654701..38657049,2	K562	blood:

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28485796	0.88[ASN][1000 genomes]
rs475298	1.00[ASN][1000 genomes]
rs4890086	0.94[ASN][1000 genomes]
rs4890087	0.94[ASN][1000 genomes]
rs7221799	0.94[ASN][1000 genomes]
rs921394	1.00[ASN][1000 genomes]
rs9901908	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38643800-38656000	Weak transcription	Right Atrium	heart
2	chr17:38647000-38655200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
3	chr17:38647000-38656000	Weak transcription	Lung	lung
4	chr17:38647000-38656200	Weak transcription	Gastric	stomach
5	chr17:38647200-38655600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:38647200-38656000	Weak transcription	Pancreas	Pancrea
7	chr17:38648200-38655800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:38649600-38655200	Transcr. at gene 5' and 3'	A549	lung
9	chr17:38649600-38657600	Transcr. at gene 5' and 3'	NHEK	skin
10	chr17:38649800-38655400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr17:38652800-38655400	Weak transcription	Esophagus	oesophagus
12	chr17:38652800-38656000	Weak transcription	Spleen	Spleen
13	chr17:38653200-38655800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:38653600-38655600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:38653600-38656600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr17:38653800-38655200	Flanking Active TSS	Hela-S3	cervix
17	chr17:38653800-38655600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr17:38653800-38655600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr17:38653800-38655800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:38653800-38655800	Enhancers	Osteobl	bone
21	chr17:38653800-38656000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:38653800-38656400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr17:38653800-38656800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:38653800-38657000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:38653800-38657200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:38654000-38655200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr17:38654000-38655400	Enhancers	Stomach Smooth Muscle	stomach
28	chr17:38654000-38655600	Enhancers	Colon Smooth Muscle	Colon
29	chr17:38654200-38655400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr17:38654200-38655600	Enhancers	HepG2	liver
31	chr17:38654200-38655800	Enhancers	Fetal Muscle Trunk	muscle
32	chr17:38654200-38655800	Enhancers	K562	blood
33	chr17:38654200-38656000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr17:38654200-38656600	Enhancers	NHDF-Ad	bronchial
35	chr17:38654200-38656800	Enhancers	Left Ventricle	heart
36	chr17:38654200-38657000	Enhancers	Right Ventricle	heart
37	chr17:38654400-38655200	Enhancers	Duodenum Mucosa	Duodenum
38	chr17:38654400-38655600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr17:38654400-38655600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr17:38654400-38655800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr17:38654400-38656000	Enhancers	Fetal Muscle Leg	muscle
42	chr17:38654600-38655600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr17:38654600-38655600	Weak transcription	Adipose Nuclei	Adipose
44	chr17:38654600-38655600	Weak transcription	Fetal Stomach	stomach
45	chr17:38654600-38655600	Weak transcription	NH-A	brain
46	chr17:38654600-38655800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr17:38654600-38656000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr17:38654800-38655200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr17:38654800-38655400	Enhancers	Placenta	Placenta
50	chr17:38654800-38655600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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