Variant report

Variant	rs635179
Chromosome Location	chr6:165736432-165736433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs13202475	0.84[EUR][1000 genomes]
rs13205683	0.84[EUR][1000 genomes]
rs1706115	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1706117	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1706121	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1706123	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1740807	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1740811	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1740812	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs479290	0.91[ASN][1000 genomes]
rs480219	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs480275	0.91[ASN][1000 genomes]
rs482128	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs483088	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs485667	0.91[ASN][1000 genomes]
rs486002	0.88[ASN][1000 genomes]
rs487489	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs489431	0.91[ASN][1000 genomes]
rs491253	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs493931	1.00[ASN][1000 genomes]
rs495725	0.83[ASN][1000 genomes]
rs499235	0.91[ASN][1000 genomes]
rs500017	0.90[ASN][1000 genomes]
rs5003411	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs501712	0.94[ASN][1000 genomes]
rs502012	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs504371	0.94[ASN][1000 genomes]
rs504498	0.99[ASN][1000 genomes]
rs507362	0.90[ASN][1000 genomes]
rs508041	0.88[ASN][1000 genomes]
rs508897	0.87[ASN][1000 genomes]
rs509909	0.91[ASN][1000 genomes]
rs512584	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs518034	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs521211	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs522241	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs522248	1.00[ASN][1000 genomes]
rs522390	1.00[ASN][1000 genomes]
rs523056	1.00[ASN][1000 genomes]
rs524122	1.00[ASN][1000 genomes]
rs525984	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs528319	0.99[ASN][1000 genomes]
rs528361	0.99[ASN][1000 genomes]
rs528450	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs529165	0.99[ASN][1000 genomes]
rs529247	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs531974	0.99[ASN][1000 genomes]
rs532173	0.99[ASN][1000 genomes]
rs533040	0.99[ASN][1000 genomes]
rs534925	0.98[ASN][1000 genomes]
rs536502	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs536526	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs536555	0.91[ASN][1000 genomes]
rs537436	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs540913	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547304	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547832	0.99[ASN][1000 genomes]
rs547889	0.99[ASN][1000 genomes]
rs550108	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs550811	0.99[ASN][1000 genomes]
rs551504	0.99[ASN][1000 genomes]
rs554575	0.88[ASN][1000 genomes]
rs556752	0.99[ASN][1000 genomes]
rs557104	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs557916	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564788	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs571366	1.00[ASN][1000 genomes]
rs572280	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs574295	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs575092	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs575669	0.88[ASN][1000 genomes]
rs578066	0.85[ASN][1000 genomes]
rs579312	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580810	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs590993	0.99[ASN][1000 genomes]
rs592768	1.00[ASN][1000 genomes]
rs617910	0.93[ASN][1000 genomes]
rs619736	1.00[ASN][1000 genomes]
rs621122	0.85[ASN][1000 genomes]
rs622800	1.00[ASN][1000 genomes]
rs637343	0.99[ASN][1000 genomes]
rs637735	0.99[ASN][1000 genomes]
rs688805	0.92[ASN][1000 genomes]
rs860401	1.00[ASN][1000 genomes]
rs9459398	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv5586	chr6:165694448-165747217	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1812650	chr6:165716093-165737153	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv969338	chr6:165732672-165736560	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165735600-165746200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:165736000-165738800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165736000-165746400	Weak transcription	HSMMtube	muscle

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