Variant report

Variant	rs635276
Chromosome Location	chr19:39480726-39480727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39480024..39481800-chr19:39521325..39523355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161243	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs490761	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57214361	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59268123	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61265620	0.81[ASN][1000 genomes]
rs637972	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs638015	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs649150	0.82[ASN][1000 genomes]
rs650027	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs635276	CTB-189B5.3	cis	Skin Sun Exposed Lower leg	GTEx
rs635276	FBXO27	cis	Skin Sun Exposed Lower leg	GTEx
rs635276	FBXO27	cis	Esophagus Mucosa	GTEx
rs635276	CTB-189B5.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39478800-39480800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:39479000-39483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:39479400-39480800	Enhancers	HepG2	liver
4	chr19:39479400-39481000	Enhancers	Fetal Heart	heart
5	chr19:39479600-39481000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr19:39479600-39481000	Enhancers	Fetal Muscle Leg	muscle
7	chr19:39479600-39482800	Enhancers	Placenta	Placenta
8	chr19:39479800-39481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr19:39480000-39481600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:39480000-39481600	Enhancers	Fetal Muscle Trunk	muscle
11	chr19:39480000-39481600	Weak transcription	Osteobl	bone
12	chr19:39480000-39483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:39480200-39481600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:39480200-39481600	Weak transcription	Adipose Nuclei	Adipose
16	chr19:39480200-39481600	Weak transcription	A549	lung
17	chr19:39480200-39481600	Weak transcription	HMEC	breast
18	chr19:39480200-39481600	Weak transcription	NHDF-Ad	bronchial
19	chr19:39480200-39481800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:39480200-39481800	Weak transcription	Hela-S3	cervix
21	chr19:39480200-39481800	Weak transcription	HSMM	muscle
22	chr19:39480200-39483800	Weak transcription	HSMMtube	muscle
23	chr19:39480200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:39480400-39481600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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